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Drilling finds interior decay. Armillaria spreads from the outside in. You might want to avoid drilling and get your hands on the tree instead and remove dead tissue to find the extent of the infection, if any.
Sanitizing the bit between drillings is like wearing a condom between youknowwhatting. The damage is done by breaking the barrier with every penetration.
Good point re hepting. The panic over this tree associate is most unscientific. Assuming we can assess tree problems through mechanical testing primarily is, in the words of Frank Rinn, "woodoo".
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Interesting sanitation analogy. But a barrier can be broken without disease development. You have to have a pathogen to get disease. If the drill bit has a pathogen on it, and you drill into the tree, you just introduced the pathogen. So if one buttress root is showing symptoms of disease, it would be a bad idea to not sanitize when you drill into non-symptomatic roots, because at the moment they're healthy.
If you had an infected cut on your leg, would you wipe that cut and then touch a cut on your arm? Probably not, because you don't want to spread the infection, even though the host is already diseased.
You're a huge advocate of cutting or cleaning out decay from infected areas on trees. I'm interested in reading some peer-reviewed literature on this technique, would you pass along some names and publications?